Faculty and Staff works in the Biology Department.

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Submissions from 2021

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Cats Teach Stats: An Interactive Module to Help Reduce Anxiety When Learning Statistics in Biology, Suann Yang, Jenny Hazlehurst, and Darcy A. A. Taniguchi

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Data on Dead Zones and a Scientist Spotlight, Suann Yang and Benjamin Negrete Jr.

Submissions from 2020

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Transposable element control disrupted by meiotic drive in a stalk-eyed fly genome, Josephine A. Reinhardt

Submissions from 2019

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Discovery of adults linked to cloning oceanic starfish larvae (Oreaster, asteroidea: Echinodermata), Daniel Janies, Yoalli Quetzalli Hernández-Díaz, Francisco Alonso Solís-Marín, Karen Lopez, Boyan Alexandrov, Madeline Galac, Joan Herrera, Janessa Cobb, Thomas A. Ebert, and Isidro Bosch

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Knowing is half the battle: Assessments of both student perception and performance are necessary to successfully evaluate curricular transformation, Tarren J. Shaw, Suann Yang, Troy R. Nash, Rachel M. Pigg, and Jeffrey M. Grim

Submissions from 2018

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Developmental stage influences chromosome segregation patterns and arrangement in the extremely polyploid, giant bacterium Epulopiscium sp. type B, Elizabeth Hutchison

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Large palaeophiid and nigerophiid snakes from Paleogene Trans-Saharan Seaway deposits of Mali, Jacob A. McCartney, Eric M. Roberts, Leif Tapanila, and Maureen A. O'Leary

Submissions from 2017

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Distribution, composition and functions of gelatinous tissues in deep-sea fishes, Mackenzie E. Gerringer, Jeffrey C. Drazen, Thomas D. Linley, Adam P. Summers, Alan J. Jamieson, and Paul H. Yancey

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Targeted calcium influx boosts cytotoxic T lymphocyte function in the tumour microenvironment, Kyun-Do Kim, Seyeon Bae, Tara Capece, Hristina Nedelkovska, Rafael G. De Rubio, Alan V. Smrcka, Jun Chang-Duk, Jung Woojin, Byeonghak Park, Minsoo Kim, Tae-il Kim, and Minsoo Kim

Submissions from 2016

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Spermatogenesis drives rapid gene creation and masculinization of the X chromosome in stalk-eyed flies (Diopsidae), Richard H. Baker, Apurva Narechania, Rob DeSalle, Philip M. Johns, Josephiine A. Reinhardt, and Gerald S. Wilkinson

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RT-qPCR Demonstrates Light-Dependent AtRBCS1A and AtRBCS3B mRNA Expressions in Arabidopsis Thaliana Leaves, Ming-Mei chang, Anna Li, Robert Feissner, and Talal Ahmad

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5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms, Kevin T. Militello, Robert D. Simon, Alexandra H. Mandarano, Anthony Dinatale, Stacy M. Hennick, Justine C. Lazatin, and Sarah Cantatore

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Follicular lymphoma tregs have a distinct transcription profile impacting their migration and retention in the malignant lymph node, Hristina Nedelkovska, Alexander F. Rosenberg, Shannon P. Hilchey, Ollivier Hyrien, W. Richard Burack, Sally A. Quataert, Christina M. Baker, Mitra Azadniv, Stephen L. Welle, Stephen M. Ansell, Minsoo Kim, and Steven H. Bernstein

Submissions from 2015

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Relative importance of phenotypic trait matching and species' abundances in determining plant - Avian seed dispersal interactions in a small insular community, Aaron González-Castro, Suann Yang, Manuel Nogales, and Tomas A. Carlo

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Identification of allorecognition loci in neurospora crassa by genomics and evolutionary approaches, Elizabeth Hutchison

Submissions from 2014

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Sporulation in Bacteria: Beyond the Standard Model, Elizabeth Hutchison

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Identification of RNA binding motifs in the R2 retrotransposon-encoded reverse transcriptase, Varuni K. Jamburuthugoda and Thomas H. Eickbush

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The earliest colubroid-dominated snake fauna from Africa: Perspectives from the late oligocene nsungwe formation of Southwestern Tanzania, Jacob A. McCartney, Nancy J. Stevens, and Patrick M. O'Connor

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Meiotic Drive Impacts Expression and Evolution of X-Linked Genes in Stalk-Eyed Flies, Josephine A. Reinhardt, Cara L. Brand, Kimberly A. Paczolt, Philip M. Johns, Richard H. Baker, and Gerald S. Wilkinson

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Marine fish may be biochemically constrained from inhabiting the deepest ocean depths, Paul H. Yancey, Mackenzie E. Gerringer, Jeffrey C. Drazen, Ashley A. Rowden, and Alan Jamieson

Submissions from 2013

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Effective RNAi-mediated β2-microglobulin loss of function by transgenesis in Xenopus laevis, Hristina Nedelkovska, Eva-Stina Edholm, Nikesha Haynes, and Jacques Robert

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Tumor necrosis factor-alpha is produced by dying retinal neurons and is required for Müller glia proliferation during zebrafish retinal regeneration, Craig M. Nelson, Kristin M. Ackerman, Patrick O'Hayer, Travis J. Bailey, Ryne A. Gorsuch, and David R. Hyde

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De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences, Josephine A. Reinhardt, Betty M. Wanjiru, Alicia T. Brant, Perot Saelao, David J. Begun, and Corbin D. Jones

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Supporting crop pollinators with floral resources: Network-based phenological matching, Laura Russo, Nelson Debarros, Suann Yang, Katriona Shea, and David Mortensen

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Transience and constancy of interactions in a plant-frugivore network, Suann Yang, Reka Albert, and Tomas A. Carlo

Submissions from 2012

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The yeast homologue of the microtubule-associated protein Lis1 interacts with the sumoylation machinery and a SUMO-targeted ubiquitin ligase, Annabel Alonso, Sonia D'Silva, Maliha Rahman, Pam B. Meluh, Jacob Keeling, Nida Meednu, Harold J. Hoops, and Rita K. Miller

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Spectral-domain optical coherence tomography as a noninvasive method to assess damaged and regenerating adult zebrafish retinas., Travis J. Bailey, Darin H. Davis, Joseph E. Vance, and David R. Hyde

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What determines the temporal changes of species degree and strength in an oceanic island plant-disperser network?, Aaron González-Castro, Suann Yang, Manuel Nogales, and Tomas A. Carlo

Submissions from 2011

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A network model for plant-pollinator community assembly, Colin Campbell, Suann Yang, Reka Albert, and Katriona Shea

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Retention time variability as a mechanism for animal mediated Long-Distance dispersal, Vishwesha Guttal, Frederic Bartumeus, Gregg Hartvigsen, and Andrew L. Nevai

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Using R to build and assess network models in biology, Gregg Hartvigsen

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Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis, Anton Poliakov, Calum W. Russell, Lalit Ponnala, Harold J. Hoops, Qi Sun, Angela E. Douglas, Klaas J. Van Wijk, and K.J.

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In vivo electroporation of morpholinos into the adult zebrafish retina., Ryan Thummel, Travis J. Bailey, and David R. Hyde

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The effect of consumers and mutualists of vaccinium membranaceum at Mount St. Helens: Dependence on successional context, Suann Yang, Eelke Jongejans, Sylvia Yang, and John G. Bishop

Submissions from 2010

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N-P co-limitation of primary production and response of arthropods to N and P in early primary succession on Mount St. Helens Volcano, John G. Bishop, Niamh B. O'Hara, Jonathan H. Titus, Jennifer L. Apple, Richard A. Gill, and Louise Wynn

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Comparative in vivo study of gp96 adjuvanticity in the frog Xenopus laevis, Hristina Nedelkovska, Tanya Cruz-Luna, Pamela McPherson, and Jacques Robert

Submissions from 2009

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Successional change in phosphorus stoichiometry explains the inverse relationship between herbivory and lupin density on Mount St. Helens, Jennifer L. Apple, Michael Wink, Shannon E. Wills, and John G. Bishop

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Highly polymorphic microsatellites in the North American snakeweed grasshopper, Hesperotettix viridis, Tony Grace, Anthony Joern, Jennifer L. Apple, Susan J. Brown, and Samantha M. Wisely

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Transcriptional profiling and functional analysis of heterokaryon incompatibility in Neurospora crassa reveals that reactive oxygen species, but not metacaspases, are associated with programmed cell death, Elizabeth Hutchison

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De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae, Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, and Jeffery L. Dangl

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Microscopic investigation of reversible nanoscale surface size dependent protein conjugation, Kazushige Yokoyama, Hyunah Cho, Sean P. Cullen, Matthew Kowalik, Nicole M. Briglio, Harold Hoops, Zhouying Zhao, and Michael A. Carpenter

Submissions from 2008

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Reduced dNTP binding affinity of 3TC-resistant M184I HIV-1 reverse transcriptase variants responsible for viral infection failure in macrophage, Varuni K. Jamburuthugoda, Jose M. Santos-Velazquez, Mark Skasko, Darwin J. Operario, Vandana Purohit, Pauline Chugh, Erika A. Szymanski, Joseph E. Wedekind, Robert A. Bambara, and Baek Kim

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KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei, Salvador Zipagun Tarun Jr., Achim Schnauffer, Nancy Lewis Ernst, Rosemary Proff, Junpeng Deng, William Hol, Kenneth Stuart, and K.

Submissions from 2006

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Identification of the heparin-binding determinants within fibronectin repeat III1: Role in cell spreading and growth, Liqiong Gui, Katherine Wojciechowski, Candace D. Gildner, Hristina Nedelkovska, and Denise C. Hocking

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Modification of human immunodeficiency virus type 1 reverse transcriptase to target cells with elevated cellular dNTP concentrations, Varuni K. Jamburuthugoda, Pauline Chugh, and Baek Kim

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KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei, Rezaq Salavati, Nancy Lewis Ernst, Jeffrey O'Rear, Troy Gilliam, Salvador Tarun Jr., Kenneth Stuart, and K.

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Mutant Neurogenin-3 in congenital malabsorptive diarrhea, Jiafang Wang, Galen Cortina, S. Vincent Wu, Robert Tran, Jang-Hyeon Cho, Ming-Jer Tsai, Travis J. Bailey, Milan Jamrich, Marvin E. Ament, William R. Treem, Ivor D. Hill, Jorge H. Vargas, George Gershman, Douglas G. Farmer, Laurie Reyen, and Martin G. Martín

Submissions from 2005

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RNA polymerase II synthesizes antisense RNA in Plasmodium falciparum, Kevin T. Militello, Vishal Patel, Anne-Danielle Chessler, Julia K. Fisher, Jacob M. Kasper, Anusha Gunasekera, and Dyann F. Wirth

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Mechanistic differences in RNA-dependent DNA polymerization and fidelity between murine leukemia virus and HIV-1 reverse transcriptases, Mark Skasko, Kellie K. Weiss, Holly M. Reynolds, Varuni Jamburuthugoda, Kwi Lee, and Baek Kim

Submissions from 2004

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Regulation of development by Rx genes, Travis J. Bailey, Heithiem El-Hodiri, Li Zhang, Rina Shah, Peter H. Mathers, and Milan Jamrich

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Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase, Tracy L. Diamond, Mikhail Roshal, Varuni K. Jamburuthugoda, Holly M. Reynolds, Aaron R. Merriam, Kwi Y. Lee, Mini Balakrishnan, Robert A. Bambara, Vincente Planelles, Stephen Dewhurst, and Baek Kim

Submissions from 2003

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Polyadenylation regulates the stability of Trypanosoma brucei mitochondrial RNAs, Christopher M. Ryan, Kevin T. Militello, and Laurie K. Read

Submissions from 2002

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Development and characterization of a reconstituted yeast translation initiation system, Mikkel A. Algire, David Maag, Peter Savio, Michael G. Acker, Salvador Z. Tarun Jr., Alan B. Sachs, Katsura Asano, Klaus H. Nelson, Deanne S. Olsen, Lon Phan, Alan G. Hinnebusch, Jon R. Lorsch, and J.R.

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One-step affinity purification of the yeast ribosome and its associated proteins and mRNAs, Toshifumi Inada, Eric Winstall, Salvador Zipagun Tarun Jr., John R. Yates III, Dave Schieltz, Alan B. Sachs, and A.B. Sachs

Submissions from 2000

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The analysis of leaf shape using fractal geometry, Gregg Hartvigsen

Submissions from 1999

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Inhibition of fibronectin matrix assembly by the heparin-binding domain of vitronectin, Denise C. Hocking, Jane Sottile, Thomas Reho, Reinhard Fässler, and Paula J. McKeown-Longo

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Coordination of kRNA editing and polyadenylation in Trypanosoma brucei mitochondria: Complete editing is not required for long poly(A) tract addition, Kevin T. Militello and Laurie K. Read

Submissions from 1997

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Cross-talk between adherens junctions and desmosomes depends on plakoglobin, Jani E. Lewis, James K. Wahl III, Kristin M. Sass, Pamels J. Jensen, Pamela J. Johnson, and Margaret J. Wheelock

Submissions from 1996

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The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity, Ronald Boeck, Salvador Zipagun Tarun Jr., Michael Rieger, Julie A. Deardorff, Silke Muller-Auer, Alan B. Sachs, and A.B.

Submissions from 1995

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A common function for mRNA 5' and 3' ends in translation initiation in yeast, Salvador Zipagun Tarun Jr., Alan B. Sachs, and A.B.

Submissions from 1994

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E-cadherin mediates adherens junction organization through protein kinase C, Jani E. Lewis, Pamela J. Jensen, Keith R. Johnson, and Margaret J. Wheelock

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Pre-feeding embryos of Antarctic and temperate echinoderms use dissolved organic material for growth and metabolic needs, Fraser M. Shilling and Isidro Bosch

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Late Quaternary history of low- and mid-elevation vegetation in the white mountains of New Hampshire, Ray W. Spear, Margaret B. Davis, and Linda C.K. Shane

Submissions from 1993

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Flagellar, cellular and organismal polarity in Volvox carteri, Harold J. Hoops

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Phosphorylation and activation of protamine kinase by two forms of a myelin basic protein kinase from extracts of bovine kidney cortex, Shrikanth A.G. Reddy, Hong Guo, Salvador Zipagun Tarun Jr., Zahi Damuni, and Z.

Submissions from 1991

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Reversion of forest to tundra in the central Yukon, Les C. Cwynar and Ray W. Spear

Submissions from 1989

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Late-Quaternary history of high-elevation vegetation in the White Mountains of New Hampshire, Ray W. Spear

Submissions from 1985

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Basal bodies and associated structures are not required for normal flagellar motion or phototaxis in the green alga Chlorogonium elongatum, Harold J. Hoops and George B. Witman

Submissions from 1984

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Flagellar waveform and rotational orientation in a Chlamydomonas mutant lacking normal striated fibers, Harold J. Hoops, Robin L. Wright, Jonathan W. Jarvik, and George B. Witman

Submissions from 1983

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Ultrastructure and development of the flagellar apparatus and flagellar motion in the colonial graeen alga Astrephomene gubernaculifera., Harold J. Hoops and Gary L. Floyd

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Outer doublet heterogeneity reveals structural polarity related to beat direction in Chlamydomonas flagella., Harold Hoops and George B. Witman